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Am J Physiol Cell Physiol 290: C1599-C1609, 2006. First published January 11, 2006; doi:10.1152/ajpcell.00289.2005
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GROWTH, DIFFERENTIATION, AND APOPTOSIS

130-kDa smooth muscle myosin light chain kinase is transcribed from a CArG-dependent, internal promoter within the mouse mylk gene

Feng Yin, April M. Hoggatt, Jiliang Zhou, and B. Paul Herring

Department of Cellular and Integrative Physiology, Indiana University School of Medicine, Indianapolis, Indiana

Submitted 14 July 2005 ; accepted in final form 10 January 2006


    ABSTRACT
 TOP
 ABSTRACT
 EXPERIMENTAL PROCEDURES
 RESULTS
 DISCUSSION
 GRANTS
 REFERENCES
 
The 130-kDa smooth muscle myosin light chain kinase (smMLCK) is a Ca2+/CaM-regulated enzyme that plays a pivotal role in the initiation of smooth muscle contraction and regulation of cellular migration and division. Despite the critical importance of smMLCK in these processes, little is known about the mechanisms regulating its expression. In this study, we have identified the proximal promoter of smMLCK within an intron of the mouse mylk gene. The mylk gene encodes at least two isoforms of MLCK (130 and 220 kDa) and telokin. Luciferase reporter gene assays demonstrated that a 282-bp fragment (–167 to +115) of the smMLCK promoter was sufficient for maximum activity in A10 smooth muscle cells and 10T1/2 fibroblasts. Deletion of the 16 bp between –167 and –151, which included a CArG box, resulted in a nearly complete loss of promoter activity. Gel mobility shift assays and chromatin immunoprecipitation assays demonstrated that serum response factor (SRF) binds to this CArG box both in vitro and in vivo. SRF knockdown by short hairpin RNA decreased endogenous smMLCK expression in A10 cells. Although the SRF coactivator myocardin induced smMLCK expression in 10T1/2 cells, myocardin activated the promoter only two- to fourfold in reporter gene assays. Addition of either intron 1 or 6 kb of the 5' upstream sequence did not lead to any further activation of the promoter by myocardin. The proximal smMLCK promoter also contains a consensus GATA-binding site that bound GATA-6. GATA-6 binding to this site decreased endogenous smMLCK expression, inhibited promoter activity in smooth muscle cells, and blocked the ability of myocardin to induce smMLCK expression. Altogether, these data suggest that SRF and SRF-associated factors play a key role in regulating the expression of smMLCK.

myocardin; serum response factor; GATA; transcriptional regulation; gene expression; telokin


MYOSIN LIGHT CHAIN KINASE (MLCK) phosphorylates the 20-kDa regulatory light chain (RLC) of smooth muscle and nonmuscle myosin in the presence of Ca2+/CaM, which facilitates myosin interaction with actin filaments (12). In smooth muscle, phosphorylation of the myosin RLC is an obligatory step involved in the initiation of contraction. In many cells, phosphorylation of RLC by MLCK is also important in regulating cellular migration and division (22).

The 130-kDa smooth muscle MLCK (smMLCK) is encoded by the MYLK gene, which is highly conserved among different species, including birds, mice, and humans (1, 3, 14). In the mouse, a single functional mylk gene is located on chromosome 16B4–16B5, spanning >200 kb and containing 31 exons that encode at least three different proteins from a common open reading frame. Exons 1–31 encode the 220-kDa MLCK, which has been referred to as the nonmuscle or endothelial cell MLCK; exons 15–31 encode smMLCK; and exons 29–31 encode telokin or kinase-related protein (KRP) (14, 31). Of these, smMLCK is the principal regulator of the myosin II molecular motor in the initiation of smooth muscle contraction. Although the smMLCK is expressed at the highest levels in smooth muscle tissues, it is ubiquitous in all adult tissues, including skeletal and cardiac muscle (16). RLC phosphorylation induced by smMLCK is also important in regulating actomyosin-based cytoskeletal functions in nonmuscle cells, including focal adhesion and stress fiber formation, secretion, ion exchange, cytokinesis, neurite growth cone advancement, cell spreading, and migration (22).

Given the pivotal role of smMLCK in regulating smooth muscle contractile activity and its myriad functions in nonmuscle cells, changes in the expression of smMLCK are likely to have profound effects on the physiological functions of cells. Several studies have described changes in smMLCK expression during development (6, 10, 16) and under various pathological conditions (13), but the mechanisms responsible for mediating these changes have not been elucidated. In the current study, we have identified the proximal promoter of the mouse smMLCK, which is located within an intron of the mylk gene. Functional analysis of the smMLCK promoter revealed that a single CArG box is required for basal promoter activity in smooth muscle and nonmuscle cell types. The smooth and cardiac muscle restricted serum response factor (SRF) coactivator myocardin robustly induced smMLCK expression in 10T1/2 cells, although it increased the activity of the proximal smMLCK promoter only twofold in reporter gene assays. In contrast to SRF and myocardin, GATA-6 repressed the activity of the smMLCK promoter and inhibited smMLCK protein expression in vascular smooth muscle cells. Altogether, these studies indicate that expression of the 130-kDa smMLCK is regulated by a CArG-dependent promoter located within an intron of the mouse mylk gene.


    EXPERIMENTAL PROCEDURES
 TOP
 ABSTRACT
 EXPERIMENTAL PROCEDURES
 RESULTS
 DISCUSSION
 GRANTS
 REFERENCES
 
Plasmid constructs and promoter-reporter gene assays. Mouse GATA-6 wild-type cDNA and adenovirus (25) were both kindly provided by Dr. Jeffery D. Molkentin (Department of Pediatrics, University of Cincinnati and Children's Hospital Medical Center, Cincinnati, OH). Mouse myocardin wild-type cDNA in pcDNA3.1-myc/His vector (32) was kindly provided by Dr. Eric N. Olson (Department of Molecular Biology, The University of Texas Southwestern Medical Center at Dallas, Dallas, TX). An expression plasmid containing human SRF cDNA (27) was a generous gift from Dr. Ron Prywes (Dept. of Biological Sciences, Columbia University, New York, NY). Mouse myocardin-related transcription factor A (MRTFA) wild-type cDNA was cloned from expressed sequence tag cDNA (IMAGE clone 6821370) and then subcloned into pcDNA3.1-myc/His expression vector.

A 6,591-bp fragment of the mylk gene spanning –6,476 to +115 bp (relative to the transcription initiation site of smMLCK) and an 8,711-bp fragment extending from –389 to +8,322 were amplified using the Elongase amplification system (Invitrogen, Carlsbad, CA) essentially as described by the manufacturer, with mouse genomic DNA used as the template. The primers used were –389 to +8,322 sense, GACGCGTCGTGAGTGCCCCCAGGAGTAGCCTG; antisense, GCGTCGACGCGACTTGGCAGGAACACTCTGCCTGG; and –6,476 to +115 sense, GACGCGTCGTGAGTCTGCCTGTCCTGCCAGCC; antisense, GCGTCGACGGAGCACCAACTCCTCCACCACCAC. A 504-bp proximal promoter fragment extending from –389 to +115 was amplified using standard PCR techniques with Deep Vent polymerase (New England BioLabs, Ipswich, MA), and the following primers: sense, CTCGAGTGAGTGCCCCCAGGAGTAGCCTGGC, and antisense, AAGCTTGAGCACCAACTCCTCCACCACCACAG. Amplified DNA fragments were subcloned into the pGL2 basic luciferase reporter vector (pGL2b; Promega, Madison, WI). The –389 to +8,322 fragment resulted in fusion of the first 296 amino acids of smMLCK to the amino terminus of luciferase. Truncations of the proximal promoter were amplified by PCR using the 504-bp smMLCK-pGL2b plasmid as the template and then were subcloned into pGL2b. The SRF- or GATA-binding sites were deleted or mutated within the proximal promoter using a QuickChange site-directed mutagenesis kit according to the manufacturer's directions (Stratagene, La Jolla, CA). The integrity of all constructs was confirmed by DNA sequencing, although for the –389 to +8,322 construct, only the ends of the fragments and the conserved intronic CArG box and flanking region were sequenced (~3.5 kb total). Within the –6,476 to +389 construct, we observed 10 base substitutions and 4 base insertions compared with the mouse genome sequence (August 2005 release). These differences likely resulted from a combination of sequencing and PCR errors and from nucleotide polymorphisms between mouse strains; however, none of these differences were in conserved regions containing putative transcription factor-binding sites. There also were no differences between the sequence of the –389 to +8,322 PCR products and the mouse genome (August 2005 release) within any conserved regulatory element. In addition, two independent constructs containing this promoter fragment, which were obtained by performing separate PCR experiments, were generated, analyzed, and shown to behave identically. Data presented are means of data obtained from both constructs.

Plasmids were transfected into rat A10 smooth muscle cells and mouse 10T1/2 cells using FuGENE 6 reagent (Roche, Indianapolis, IN). Cells to be transfected were seeded at 3 x 104 cells/well in 24-well plates. After seeding (16–18 h), each dish was washed once with PBS (pH 7.4), replaced with 0.5 ml of complete medium, and incubated with a total of 1 µg of plasmid DNA and 2 µl of FuGENE 6 reagent in 50 µl of DMEM. Twenty-four hours later, 5 µl of cleared extracts (100 µl/well) were used for dual luciferase assays using a dual luciferase reporter assay system according to the manufacture's directions (Promega). Reporter gene firefly luciferase activities were normalized to the Renilla luciferase activity of the internal control.

Rapid amplification of 5' cDNA ends. To identify the transcriptional start sites of smMLCK, a GeneRacer kit (Invitrogen) was used according to the manufacturer's instructions. Briefly, rapid amplification of 5'-cDNA ends (5'-RACE) was performed in 4 µg of total RNA from mouse bladder or stomach tissue, incubated with calf intestinal phosphatase to remove the 5' phosphates, and then treated with tobacco acid pyrophosphatase to remove the 5' cap structure. GeneRacer RNA oligo was ligated to the 5' end of the decapped mRNA samples using T4 RNA ligase. RT-PCR were then performed to amplify the 5'-end using GeneRacer 5' primer and the gene-specific primer (5'-CTGAAGGTTGGCGCGGAAATCCATCTG-3'). The PCR products were extracted from agarose gels, cloned into the pCR2.1 vector (Invitrogen), and sequenced.

Gel mobility shift assays. Nuclear extracts were prepared from COS cells transfected with GATA-6 or SRF expression plasmids as described previously (8). Nuclear extracts were prepared from A10, 10T1/2, and mouse proximal colon smooth muscle cells (LI) cells as described previously (7). Gel mobility shift assays were performed in a final volume of 15 µl. Binding mixes contained 0.2 ng (1.5 x 104 counts per minute) of end-labeled, double-stranded DNA probe, 200 ng of poly(dI-dC), 4.5 µg of BSA, and various amounts of nuclear extract protein. Annealed oligonucleotides were labeled using [32P]dCTP and Klenow DNA polymerase (Promega). Unincorporated nucleotides were removed by agarose gel electrophoresis. All binding reactions were incubated for 20 min at room temperature, and then the DNA-protein complexes were resolved by performing electrophoresis through 4% polyacrylamide gels containing 6.75 mM Tris (pH 7.9), 3.3 mM sodium acetate (pH 7.9), 1 mM EDTA, and 2.5% glycerol. The gel was dried and autoradiographed with intensifying screens at –80°C overnight. Sequences of the sense and antisense strands of the oligonucleotide probes are as follows: smMLCK probe sense, 5'-CGTCCCTTATAAGGCTACTGAAATCATTACCGATATAATAAAC-3'; smMLCK probe antisense, 5'-AGCTGTTTATTATATCGGTAATGATTTCAGTAGCCTTATAAGGG-3'; {Delta}CArG smMLCK probe sense, 5'-CGTCCCTTATAATACTGAAATCATTACCGATATAATAAAC-3'; {Delta}CArG smMLCK probe antisense, 5'-AGCTGTTTATTATATCGGTAATGATTTCAGTATTATAAGGG-3'; mGATA smMLCK probe sense, 5'-CGTCCCTTATAAGGCTACTGAAATCATTACCCCTATAATAAAC-3'; and mGATA smMLCK probe antisense, 5'-AGCTGTTTATTATAGGGGTAATGATTTCAGTAGCCTTATAAGGG-3'.

SRF shRNA. Oligonucleotides specific to SRF (AGAGAATGAGTGCCACTGG) or a negative control (ACTACCGTTGTTATAGGTG) were inserted downstream from an H1 promoter in the adenoviral shuttle vector pRNAT-H1.1/Shuttle (GenScript, Scotch Plains, NJ), which is compatible with the Adeno-X system (Clontech Laboratories, Palo Alto, CA). The shuttle vector contains the H1 promoter, which drives the small interfering RNA cassette, together with a cytomegalovirus-driven coral green fluorescent protein (GFP) cDNA. Adenoviral constructs were then created using the Adeno-X vectors essentially as the manufacturer instructed and as described previously (39). The recombinant adenovirus was packaged in human embryonic kidney HEK-293 cells and amplified to obtain high-titer stocks.

Adenoviral infection and Western blot analysis. For adenoviral infection, A10 cells or 10T1/2 cells were seeded onto six-well plates at a density of 2 x 105 cells/well and grown overnight to near confluence. These cells were washed with PBS to remove serum and infected with adenovirus in PBS at a multiplicity of infection of 100 for 4 h at 37°C. These conditions resulted in close to 100% infection of cells. Seventy-two hours after infection, cell protein extracts were prepared using RIPA buffer and protein concentrations were determined using the bicinchoninic acid protein assay kit (Pierce Biotechnology, Rockford, IL). Western blot analysis was performed essentially as described previously (35). Thirty micrograms of protein were fractionated on 7.5% or 15% SDS-PAGE gels. The protein sample was electrophoretically transferred onto a polyvinylidene difluoride membrane and verified using Ponceau S staining. The membrane was then probed with a series of antibodies. Antibodies used in this study were anti-GATA-6 (1:1,000 dilution; Santa Cruz Biotechnology, Santa Cruz, CA), anti-MLCK (clone K36, 1:10,000 dilution; Sigma Chemical, St. Louis, MO), anti-SRF (1:10,000 dilution; Santa Cruz Biotechnology), anti-GFP (1:1,000 dilution; Clontech Laboratories), anti-hemagglutinin epitope tag (1:1,000 dilution; Covance Research Products, Berkeley, CA), anti-beta-actin (1:10,000 dilution; Sigma), and anti-vinculin (1:5,000 dilution; Sigma). Primary antibodies were visualized using secondary antibodies (anti-mouse or anti-rabbit IgG, 1:10,000 dilution) and conjugated with horseradish peroxidase using SuperSignal West Pico chemiluminescence substrate according to the manufacturer's instructions (Pierce Biotechnology). Chemiluminescence was detected and quantitated using a charge-coupled device camera system (Fujifilm).

Chromatin immunoprecipitation. Chromatin immunoprecipitation (ChIP) assays were performed according to the manufacturer's instructions (Upstate Biotechnology, Lake Placid, NY). Briefly, ~3 x 106 cells were cross-linked with 1% formaldehyde at 37°C for 10 min. Cells were then washed in ice-cold PBS and harvested in 6 ml of PBS supplemented with protease inhibitors. Cell pellets were resuspended in 200 µl of SDS lysis buffer. After sonication and centrifugation, supernatants were diluted 10-fold with ChIP dilution buffer and precleared by incubation with salmon sperm DNA-protein A agarose slurry for 30 min at 4°C with rotation. After centrifugation, immunoprecipitation of the supernatant was performed overnight at 4°C with specific antibodies. Antibodies used for this experiment were anti-SRF (Santa Cruz Biotechnology) and anti-rabbit IgG control. DNA from the immunoprecipitated and input samples were purified, and 2 µl of each were used as the template for standard PCR. The primer sequences were as follows: smMLCK promoter sense (–304 to –275), 5'-GTCCTCCTGCTGAGGCTACCAGAGCCAAAG-3'; smMLCK promoter antisense (–24 to +1), 5'-CTGAAACGTCAGGGGAGAGCAAATC-3'; smMLCK exon 1 sense (+42 to +64), 5'-CCTTCACTGGTTATTGCAGGGGG-3'; smMLCK exon 1 antisense (+354 to +376), 5'-GCGGAAATCCATCTGCTCGGCTG-3'; and smMLCK intron sense (+1,641 to +1,663), 5'-CCATGGGCAAGCCAAACCCTCAC-3', smMLCK intron antisense (+1,762 to +1,783), 5'-CACGGGTGACAGGGCTTGCACC-3'.

Statistical analysis. Data are expressed as means ± SE. The statistical significance of differences between group means was determined using an unpaired two-tailed Student's t-test or ANOVA. P < 0.05 was considered significant.


    RESULTS
 TOP
 ABSTRACT
 EXPERIMENTAL PROCEDURES
 RESULTS
 DISCUSSION
 GRANTS
 REFERENCES
 
Cloning of the smMLCK promoter. To determine the transcription start site of the 130-kDa smMLCK, 5'-RACE analysis was performed using mouse bladder and stomach total RNA as the template. From each tissue, two major RACE products were obtained (Fig. 1A). Cloning and sequencing of these products revealed heterogeneity in the transcription initiation sites, the most 5' initiation site was designated +1 and was located 364 bp upstream of the translation start codon (Fig. 1, B and C). Other major initiation sites were identified at +47, +54, and +118. There are no consensus TATA boxes within 30–40 nt of the transcription initiation sites, suggesting that the smMLCK promoter, similar to the majority of mammalian promoters (4), is likely to be TATA independent and uses other cis-acting elements to recruit the transcription initiation complex to the promoter. For example, multiple GC-rich regions may represent binding sites for Spl within the core promoter, and Sp1 was previously shown to promote transcription initiation from TATA-less promoters (4). In addition, although none of the transcription initiation sites conform to a perfect consensus initiator sequence (PyPyANPyPy), each of the initiation sites deviate from this consensus at only one or two positions. These data suggest that the GC-rich elements, possibly together with degenerate initiator elements, may be important for transcription initiation of the smMLCK. The mylk gene spans >200 kb in the mouse genome (14) and contains at least 31 exons encoding at least three transcripts (220-kDa MLCK, 130-kDa smMLCK, and telokin) that are expressed in a cell-specific manner from alternative promoters (18). The smMLCK transcript starts from within intron 14 of the mylk gene such that the first exon of the smMLCK includes exon 15 of the 220-kDa MLCK together with 59 bp of a unique 5'-untranslated sequence from intron 14 (Fig. 1B). The translation initiation site of the smMLCK is located in exon 15 of the mylk gene, 364 bp from the most 5' initiation site of the 130-kDa smMLCK transcript.


Figure 1
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Fig. 1. Cloning of the smooth muscle myosin light chain kinase (smMLCK) promoter. A: agarose gel showing the products generated by rapid amplification of 5'-cDNA ends (5'-RACE) using mRNA isolated from stomach or bladder as indicated. B: schematic representation of a portion of the mouse mylk gene (derived from alignment of the 220-kDa MLCK cDNA with the mouse genome; see Ref. 14). 5'-RACE analysis identified that transcription initiation site of the 130-kDa smMLCK within intron 14 of the mylk gene and 364 bp upstream of the translation start codon. The location of two genomic fragments of the gene that were cloned by PCR using mouse genomic DNA as the template and analyzed in reporter gene assays are indicated below the scheme. C: DNA sequence of the –389 to +115 bp proximal promoter of the mouse smMLCK. Potential transcription factor-binding motifs are boxed. Arrows indicate transcription start sites identified in the sequence of 5'-RACE products shown in A, with the most 5' start site designated +1. The position of the 5'-end of exon 15 of the 220-kDa MLCK is indicated. The 5'-ends of truncated fragments of the promoter analyzed in experiments shown in Fig. 2 are indicated.

 
To analyze the transcriptional regulation of smMLCK, we isolated the genomic region containing intron 14 and part of exon 15 of the mylk gene, representing the putative proximal promoter (–389 to +115) of the smMLCK transcript, by performing PCR with mouse genomic DNA. We also cloned a longer 5'-flanking region (–6,476 to +115) containing all of intron 13 and exon 14 in addition to the proximal promoter region. The proximal promoter region from –389 to +115 exhibited similar levels of activity in A10 and 10T1/2 cells (Fig. 2A). The longer 5'-flanking region from –6,476 to +115 showed promoter activity similar to that of the proximal region (Fig. 2B).


Figure 2
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Fig. 2. A single CArG box is required for basal smMLCK promoter activity. A: activity of proximal (–389 to +115) smMLCK promoter luciferase reporter genes was determined in A10 and 10T1/2 cells. smMLCK reporter constructs or empty pGL2 basic luciferase reporter vector (pGL2b; 0.5 µg) were cotransfected into cells, together with an internal control thymidine kinase-driven Renilla luciferase vector plasmid (pRL-TK; 0.5 µg). Twenty-four hours after transfection, cells were lysed and assayed for luciferase activity. Promoter activity was normalized to internal control Renilla luciferase and expressed as normalized relative light units. B and C: A10 cells (B) and 10T1/2 cells (C) were transfected with the indicated smMLCK promoter-luciferase reporter gene constructs (0.5 µg), together with internal control pRL-TK (0.5 µg). Promoter activity measured as described in A is expressed relative to the proximal (–389 to +115) smMLCK promoter, and values are presented as means ± SE of 6 samples. *P < 0.01, statistically different from –6,476 to +115 construct (ANOVA; B and C). D: sequences of wild-type and mutant or deleted CArG boxes analyzed in context of –389 to +115 promoter in E are shown. E: A10 and 10T1/2 cells were cotransfected with 0.5 µg of wild-type or mutant smMLCK promoter constructs shown in D, together with 0.5 µg of internal control pRL-TK plasmid. Luciferase activity was assayed after 24 h, as described in EXPERIMENTAL PROCEDURES. Data are means ± SE of 6 independent transfections expressed relative to wild-type –389 to +115 plasmid. *P < 0.001, mutants significantly different vs. wild type (ANOVA).

 
A single CArG box contributes to basal activity of smMLCK promoter. To map the minimal region required for activity of the smMLCK promoter, we generated luciferase reporter gene constructs that contain a series of deletions of the 5'-flanking region (Fig. 1C) and then analyzed their activity in A10 and 10T1/2 cells. In A10 cells, truncations of the promoter down to –167 bp had no effect on promoter activity and further deletion of the 16-bp region between –167 and –151 drastically decreased promoter activity (Fig. 2B). In 10T1/2 cells, truncation of the promoter from –289 to –174 resulted in a small (20%) but statistically significant (P < 0.01) decrease in promoter activity, suggesting that this region may contain a weak positive element (Fig. 2C). However, similarly to the situation in A10 cells, truncation of the promoter from –167 to –151 decreased promoter activity to 20% of wild-type levels. Interestingly, a CArG box, the consensus binding site for SRF, was found in this region. To further determine whether this CArG box is required for basal smMLCK promoter activity, four subsequent mutations or deletions were generated that spanned this 16-bp region (Fig. 2D). Each of the mutant reporter genes that disrupted the CArG box (mCArG-1, {Delta}CArG-2, and {Delta}CArG-3), but not deletion of adjacent residues ({Delta}TACT), significantly decreased promoter activity to levels ranging from 34.2% to 61.1% of those observed in the wild-type construct in both A10 smooth muscle cells and 10T1/2 fibroblasts. Altogether, these results indicate that the 283-bp fragment (–167 to +115) acts as the minimal proximal promoter for the smMLCK gene and that a single CArG box is critical for basal promoter activity. In support of this assertion, comparison of the minimal mouse smMLCK promoter (–167 to +115) with sequences of the rat mylk and human MYLK genes revealed a remarkable homology of 96.8% and 89.6% identity, respectively, with the CArG box, GATA site, Sp1 site, CAAT box, and Forkhead box-binding sites almost entirely conserved. There is a conservative A-G substitution in the GATA site in the human gene; however, the GATG sequence also has been shown to bind weakly with GATA proteins (23).

SRF and GATA-6 bind to adjacent sites within the smMLCK promoter. A GATA transcription factor-binding site (–136 to –139) was found adjacent to the CArG box (–166 to –157) (Fig. 1C). Because GATA-6 is the major GATA factor present in smooth muscle cells, gel mobility shift assays were performed to examine the ability of SRF and GATA-6 to bind to their respective consensus sequences in the smMLCK promoter. Gel mobility shift assays using a probe that encompasses –167 to –128 of the mouse smMLCK promoter (Fig. 3A) demonstrated that SRF and GATA-6 nuclear extracts both bound specifically to this fragment. These mobility-shifted complexes could be supershifted by antibodies to the respective proteins, but not by nonspecific anti-Sp1 antibody (Fig. 3B). To further confirm whether these consensus binding elements were necessary for SRF and GATA-6 binding, two probes were generated that contained nucleotide mutations (mGATA probe) or a 3-bp deletion ({Delta}CArG probe) within these consensus sequences (Fig. 3A). The results of these assays have demonstrated that deletion of the CArG consensus sequence abolished SRF binding. As a control, we have demonstrated that the {Delta}CArG probe was able to bind to GATA-6 with similar efficacy (Fig. 3C). In addition, mutation of the GATA consensus sequence (mGATA probe) (Fig. 3D) abolished GATA-6 binding without interfering with SRF binding. These results demonstrate that SRF and GATA-6 are able to bind to their adjacent consensus sequences in the core of the smMLCK promoter.


Figure 3
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Fig. 3. Serum response factor (SRF) and GATA-6 bind to adjacent consensus sites within smMLCK promoter. A: sequence of probes used for gel mobility shift assays. Wild-type probe encompasses –167 to –128 of mouse smMLCK promoter. Putative CArG and GATA consensus sequences are underlined. B: 32P-labeled, double-stranded, wild-type smMLCK probe was incubated with nuclear extracts from cells transfected with SRF or GATA-6 as indicated. After incubation for 20 min at room temperature, anti-SRF, anti-GATA-6, or anti- specificity protein 1 (anti-Sp1) antibodies were added and incubated for an additional 1 h on ice. Samples were run on a 4% polyacrylamide gel, and mobility-shifted complexes were visualized using autoradiography. Positions of specific mobility-shifted complexes are indicated by arrows, and complexes that resulted from antibody supershifts are indicated by asterisks. C: to confirm that CArG box represents binding site for SRF within smMLCK promoter, 32P-labeled wild-type or {Delta}CArG smMLCK probes were incubated with SRF (top) or GATA-6 (bottom) nuclear extract and analyzed using gel mobility shift assay. Positions of SRF and GATA-6 mobility-shifted complexes are indicated. D: to confirm that consensus GATA sequence is binding site for GATA-6 within smMLCK promoter, 32P-labeled wild-type or mutant GATA (mGATA) smMLCK probes were incubated with GATA-6 (top) or SRF (bottom) nuclear extract and gel mobility shift assays were performed.

 
SRF regulates smMLCK protein expression in vivo. Gel mobility shift assays were also performed to examine the ability of endogenous SRF present in nuclear extracts from different cell lines to bind to the smMLCK promoter. One major mobility-shifted band was detected on the smMLCK promoter probe using nuclear extracts from A10 rat vascular smooth muscle cells, LI mouse proximal colon smooth muscle cells, and 10T1/2 mouse embryonic fibroblasts. The identity of SRF in this complex was confirmed by the supershift of the band observed after addition of an antibody specific for SRF (Fig. 4A). In addition, the major mobility-shifted complex observed in the cell extracts was not visible when a probe containing a deletion in the CArG box was used (Fig. 4A). ChIP assays also demonstrated that SRF bound to the endogenous smMLCK promoter in vivo in A10 cells (Fig. 4B). This binding was specific because no binding to an adjacent region from exon 1, which does not contain a CArG box, was detected. To determine the physiological role of SRF in regulating the expression of smMLCK in A10 cells, the effects of SRF knockdown by short hairpin RNA (shRNA) on endogenous smMLCK protein expression was determined. Seventy-two hours after transduction of A10 cells with control or SRF shRNA, cells were harvested and endogenous protein expression levels were assessed using Western blot analysis. This analysis revealed that knockdown of endogenous SRF resulted in parallel downregulation of smMLCK expression in A10 cells (Fig. 4, C and D). These results suggest that SRF is physiologically important in regulating smMLCK protein expression.


Figure 4
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Fig. 4. SRF regulates smMLCK expression in vivo. A: gel mobility shift assays in which wild-type 32P-labeled smMLCK probe (WT) or CArG deletion probe ({Delta}), shown in Fig. 3, were incubated with nuclear extracts from 3 different cell lines: A10, LI, and 10T1/2 cells. Positions of specific mobility-shifted complexes are indicated by arrow, and complexes resulting from anti-SRF antibody supershifts are indicated by asterisks. B: equal amount of chromatin was immunoprecipitated (IP) from A10 cells using antibodies against SRF or control rabbit IgG (as negative control). After reverse cross linking, presence of smMLCK promoter in immunoprecipitated DNA was detected using specific primers that span the proximal promoter (–304 to +1, including CArG box) or exon 1 (+42 to +376, as negative control) of smMLCK. DNA from fragmented chromatin before antibody precipitation was used as a positive control (sheared input DNA). Representative image of ethidium bromide-stained agarose gel of PCR products is presented. Similar results were obtained in 3 independent experiments. C: A10 cells were seeded in 6-well plates overnight and then infected with adenovirus encoding control short hairpin RNA (shRNA) or SRF shRNA in PBS as indicated at a multiplicity of infection of 100 for 4 h at 37°C. Seventy-two hours after infection, protein extracts were prepared from infected cells and assessed using Western blot analysis. Thirty micrograms of extract from each lane were analyzed. Each panel shows a representative single blot that was reacted sequentially with antibodies to each of the proteins indicated. D: densitometric quantitation of data obtained from 2 independent experiments indicated that smMLCK and SRF were significantly reduced in cells expressing SRF shRNA compared with cells expressing control shRNA. *P < 0.05. Vinculin expression was used as an internal control indicating equal loading of protein in each lane. Green fluorescent protein (GFP) expression from shRNA adenovirus is indicative of viral transduction efficiency.

 
Effect of GATA-6 on endogenous smMLCK protein expression. Because we observed that GATA-6 interacts with the consensus GATA element in the smMLCK promoter (Fig. 3), the effect of GATA-6 on smMLCK promoter activity was examined using reporter gene assays. The results showed that GATA-6 significantly decreased the activity of smMLCK promoter (–389 to +115) in A10 and 10T1/2 cells (Fig. 5A). This repression of promoter activity was abolished when the GATA consensus site was mutated within the promoter (Fig. 5B). The effect of GATA-6 on smMLCK protein expression was also examined after adenovirus-mediated overexpression of GATA-6 in A10 cells. Seventy-two hours after infection with GATA-6 adenovirus, expression of the smMLCK was significantly downregulated, whereas the expression of the 220-kDa MLCK was markedly increased (Fig. 5, C and D).


Figure 5
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Fig. 5. GATA-6 acts as a negative regulator of smMLCK expression. A: A10 and 10T1/2 cells were transiently transfected with the smMLCK promoter-luciferase reporter genes and either a GATA-6 expression vector or an empty vector together with an internal control Renilla luciferase plasmid as indicated. Twenty-four hours after transfection, cells were lysed and assayed for luciferase activity. Promoter activity was normalized to internal control (Renilla luciferase). Promoter activity data relative to vector control transfections are presented as means ± SE of 6 samples. *P < 0.05. B: A10 cells were transiently transfected with either wild-type smMLCK promoter luciferase reporter genes or smMLCK promoter luciferase reporter genes containing a mutant GATA site (mGATA; see Fig. 3A) and either GATA-6 expression vector or empty vector, together with internal control Renilla luciferase plasmid as indicated. Promoter activity data relative to vector control transfections are presented as means ± SE of 6 samples. *P < 0.05. C: A10 cells were seeded in 6-well plates and infected with adenovirus encoding LacZ or GATA-6 as indicated. Seventy-two hours after infection, protein extracts were prepared from infected cells and assessed using Western blot analysis with antibodies specific for indicated proteins. D: densitometric quantitation of data obtained from 2 independent experiments indicated smMLCK was significantly decreased and 220-kDa MLCK was increased in A10 cells overexpressing GATA-6. *P < 0.05.

 
Effect of myocardin on endogenous smMLCK protein expression. Myocardin is a smooth and cardiac muscle-restricted transcriptional coactivator of SRF (24, 32, 37). Previously, smMLCK was shown to be induced by myocardin expression in 10T1/2 cells (34, 38). The effects of myocardin on smMLCK promoter activity were therefore further examined. The results showed that myocardin upregulated smMLCK promoter (–389 to +115 and –6,476 to +115) activity approximately two- to fourfold in A10 and 10T1/2 cells (Fig. 6, A and B). This activation of the smMLCK promoter was SRF dependent because deletion of the CArG box abolished myocardin activation (Fig. 6C).


Figure 6
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Fig. 6. Myocardin acts as positive regulator of smMLCK expression. smMLCK promoter reporter genes was transfected into A10 (A and C) and 10T1/2 cells (B), together with 0.3 µg of empty expression vector (open bars) or 0.3 µg of myocardin (filled bars) or mouse myocardin-related transcription factor A (MRTFA; hatched bars) expression vectors as indicated. Twenty-four hours after transfection, cells were lysed and assayed for luciferase activity. Promoter activity data relative to vector control transfections are presented as means ± SE of 6 samples. D: schematic showing 5'-end of smMLCK gene. Exon 1 of smMLCK includes exon 15 of 220-kDa MLCK, intron 1 represents intron 15, and exon 2 represents exon 16 of mylk gene. Location of PCR amplicons used for chromatin immunoprecipitation (ChIP) assays shown in E are indicated as gray boxes under schematic. P, promoter amplicon; E, exon 1 amplicon; I, intronic CArG amplicon. Comparison of sequence of 63-bp region in first intron of smMLCK gene that is highly conserved across species is also shown. Conserved CArG element is boxed. Residues that are not identical in all 5 species are underlined. E: A10 cells were cross linked by formaldehyde, and fragmented chromatin was immunoprecipitated with antibodies against SRF or rabbit IgG (as negative control). After reverse cross linking, presence of conserved intronic CArG region in immunoprecipitated DNA was examined by PCR using specific primers as described in EXPERIMENTAL PROCEDURES. When same samples were amplified using primers to exon 1, no product was obtained, confirming that signal was not obtained from CArG box in proximal promoter region. DNA from sheared chromatin (input) before antibody precipitation was used as positive control. F: reporter gene that included proximal smMLCK promoter, exon 1, intron 1, and portion of exon 2 fused to firefly luciferase was transfected into A10 and 10T1/2 cells, together with 0.3 µg of empty expression vector or 0.3 µg of myocardin expression vector, as indicated. Reporter plasmid results in expression of luciferase fused in frame with first 296 amino acids of smMLCK. Twenty-four hours after transfection, cells were lysed and assayed for activity of smMLCK-luciferase fusion protein. Promoter activity data relative to vector control transfections are means ± SE; n = 6 samples.

 
Despite the fact that myocardin induced expression of the smMLCK in 10T1/2 cells (34, 38) (Fig. 7B), the direct effects of myocardin on the smMLCK promoter were minimal compared with its 500- to 1,000-fold activation of smooth muscle-restricted promoters such as telokin, SM22-{alpha}, smooth muscle {alpha}-actin, and smooth muscle myosin heavy chain (smMHC) (5, 38). Because expression of smMLCK is not restricted to smooth muscle cells, we also examined the role of a more widely expressed myocardin family member, MRTFA (33), on the smMLCK promoter. The results of this analysis demonstrated that MRTFA also activated the smMLCK promoter only approximately fourfold in A10 cells (Fig. 6C) and approximately ninefold in 10T1/2 cells (data not shown). This activation could also be abolished completely by deletion of the CArG box in the smMLCK proximal promoter. One interpretation of these data is that the proximal promoter or 6.5 kb of the 5'-flanking sequence is not sufficient to mediate high levels of activation of the promoter by myocardin family members. Indeed, when the genome sequence containing the mouse smMLCK locus was aligned with corresponding regions of the human, rat, dog, and chimpanzee genomes, two short regions of 63 and 103 bp within the 7,174-bp intron 15 of the mylk gene (intron 1 of smMLCK) were observed to be highly conserved. Interestingly, in the most proximal 63-bp region located between +1,680 and +1,742, there is a consensus CArG box (Fig. 6D). ChIP assays confirmed that SRF binds specifically to this intronic CArG box in A10 cells in vivo (Fig. 6E), suggesting that this highly conserved intronic CArG box may be important in regulating smMLCK expression. However, inclusion of the intronic CArG element in a luciferase reporter gene did not enhance the ability of myocardin to activate the smMLCK promoter (Fig. 6F).


Figure 7
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Fig. 7. GATA-6 inhibits the myocardin-induced activation of smMLCK. A: A10 or 10T1/2 cells were transfected with smMLCK reporter gene (–389 to +115), together with either empty expression vector (open bars), myocardin (filled bars), or myocardin and GATA-6 vector (stippled bars). Promoter activity data relative to vector control transfections are means ± SE; n = 6 samples. B: 10T1/2 cells were infected with adenovirus encoding LacZ or myocardin in presence or absence of GATA-6 virus (multiplicity of infection of 100 for each virus) for 4 h at 37°C. Seventy-two hours after infection, protein extracts were prepared from infected cells and assessed using Western blot analysis. C: densitometric quantitation of data obtained from 2 independent experiments indicated that myocardin-induced expression of the smMLCK could be attenuated significantly by GATA-6. *P < 0.05.

 
Myocardin-induced activation of smMLCK expression is repressed by GATA-6. Previous studies showed that GATA-6 can either augment or repress myocardin's activation of promoters in a promoter-specific manner (29, 35). The ability of GATA-6 to modify the effects of myocardin on the smMLCK promoter was thus examined. In luciferase reporter gene assays, the myocardin-induced activation of the promoter was found to be repressed completely by cotransfection of GATA-6 (Fig. 7A). In addition, the myocardin-dependent induction of the smMLCK in 10T1/2 cells could be attenuated by coinfecting cells with GATA-6-expressing adenovirus (Fig. 7, B and C).


    DISCUSSION
 TOP
 ABSTRACT
 EXPERIMENTAL PROCEDURES
 RESULTS
 DISCUSSION
 GRANTS
 REFERENCES
 
In this study, we have identified and characterized an internal promoter within the mylk gene that is responsible for transcription of the 130-kDa smMLCK. These studies have demonstrated that expression of smMLCK is regulated by SRF and SRF-associated proteins. The SRF-associated proteins myocardin and GATA-6 act as positive or negative regulators of smMLCK expression, respectively.

Three protein products of the mouse mylk gene were described previously, including telokin, 130-kDa smMLCK, and 220-kDa MLCK (2, 16, 17). The amino acid sequences of telokin and smMLCK are identical to the carboxy termini of the 220-kDa MLCK. The sequence identity between these proteins suggests that they are all encoded by the same mylk gene, either by alternative splicing or through alternative promoters. Previously, we demonstrated that the telokin transcript is derived from an internal promoter within the mylk gene rather than by alternative splicing (18). Similarly, in the current study, we have demonstrates that the smMLCK transcript is also produced from an internal promoter within the mylk gene. Both telokin and smMLCK mRNA contain short stretches of unique sequences in their 5'-untranslated regions that are not present in 220-kDa MLCK mRNA. These unique sequences are encoded within introns of the mylk gene. These results suggest that the mylk gene must contain at least three independent promoters. Although the presence of multiple promoters in a single gene is unusual, it is by no means unique and in fact is common within genes that encode other protein kinases related to MLCK, such as Unc-89, obscurin, and striated preferentially expressed gene (SPEG) (20, 21, 30). Interestingly, similarly to the promoters in the mylk gene, each of the promoters in these multipromoter genes also directs different patterns of cell-specific expression of the individual gene transcripts. For example, the SPEG gene encodes SPEG-{alpha} and SPEG-beta, which are expressed in striated muscle; BSPEG, which is expressed in the brain and the vasculature; and APEG, which is expressed in vascular smooth muscle (20). Within the mylk gene, we previously showed that telokin, which is transcribed from an internal promoter within intron 28 of the mylk gene, is expressed exclusively in smooth muscle cells and that this expression pattern is a property of a 370-bp fragment of the telokin promoter (18, 19). The smMLCK and 220-kDa MLCK transcripts have distinct tissue distributions, with the 130-kDa MLCK being the predominant form expressed in most adult tissues, whereas the 220-kDa MLCK is the most abundant form in most cultured cells (2). The 130-kDa smMLCK is expressed at its highest levels in smooth muscle tissues and cells such as A10 vascular smooth muscle cells compared with other cell types, including REF52 fibroblasts or 10T1/2 fibroblasts (9, 11, 38). None of the smMLCK promoter fragments analyzed recapitulated this cell-specific pattern of expression of the endogenous gene (Fig. 2 and data not shown). This finding may suggest that additional, more distal elements are required to mediate cell-specific expression; alternatively, cell specificity may manifest fully only in vivo. In support of the latter possibility, similarly to the smMLCK gene, the smooth muscle {alpha}-actin gene contains a conserved intronic CArG element that is not required for myocardin activation of the promoter in reporter gene assays and is not required for promoter activity in smooth muscle cells in vitro (36), but is absolutely required for expression of the promoter in smooth muscle cells in vivo in transgenic mice (26).

We have found that individual transcription factors can exert distinct effects on individual promoters within the mylk gene. Overexpression of GATA-6 in A10 vascular smooth muscle cells significantly downregulated the expression of smMLCK (Fig. 5C) and telokin (35), whereas the 220-kDa MLCK was markedly increased. Conversely, myocardin induced expression of smMLCK and telokin in 10T1/2 cells without altering expression of the 220-kDa MLCK (38) (Fig. 7). These data thus describe molecular mechanisms that begin to account for the differential activity of the promoters within the mylk gene.

Although smMLCK is ubiquitously expressed in mouse tissues, it is expressed at much higher levels in smooth muscle tissues than in any other tissue. This pattern of expression suggests that the smMLCK promoter may have properties analogous to those of promoters of smooth muscle-specific genes in addition to a basal housekeeping type of activity. Consistent with this proposal, we have demonstrated that, similarly to promoters of many smooth muscle-restricted genes, the smMLCK promoter is CArG dependent, and also that SRF binds to the CArG box within the promoter in vitro and in vivo. Accumulating evidence suggests that as a ubiquitously expressed transcription factor, SRF regulates various growth-responsive and muscle-specific genes through its interaction with different coregulators, such as myocardin, GATA family members, and Elk1. Myocardin is an extraordinarily powerful SRF cofactor that is expressed specifically in smooth and cardiac muscle cells (5, 24, 32, 37). It was previously shown that myocardin can induce the expression of many genes, including smMLCK, that are characteristic of smooth muscle cells in 10T1/2 fibroblasts (34). We have confirmed these results in the current study and also have shown that in contrast to smMLCK, the 220-kDa MLCK is not induced by myocardin in 10T1/2 cells (Fig. 7B). Interestingly, it has been reported that in a balloon-injured rat carotid artery model, expression of smMLCK and SM-2, one of the contractile smooth muscle myosin heavy chain isoforms, are both negatively regulated between 24 h and 7 days after injury (13). This decline in expression of smMLCK correlates well with the decline in expression of myocardin mRNA after vascular injury (15). This finding suggests that the loss of myocardin expression could account for a preferential decrease in the expression of the smMLCK and other smooth muscle-specific proteins compared with SRF-dependent but myocardin-independent genes, such as c-fos (15).

Despite the ability of myocardin to induce expression of the smMLCK in 10T1/2 cells at both the protein (Fig. 7B) and mRNA levels (34), reporter gene assays in the present study indicated that myocardin could increase smMLCK promoter activity only two- to fourfold (Fig. 6). This small stimulation of promoter activity is more similar to the levels of stimulation of myocardin-independent promoters such as c-fos than it is to the high levels of stimulation of smooth muscle-restricted promoters. This finding suggests that additional CArG boxes located more distally within the mylk gene may be required to mediate the myocardin activation of the smMLCK promoter. Alternatively, myocardin may induce expression of endogenous smMLCK through an indirect mechanism. Further studies, including analysis of the smMLCK promoter in vivo in transgenic mice, are required to resolve these questions.

We also found that the ability of myocardin to regulate smMLCK expression could be attenuated by GATA-6. GATA-6 is a zinc finger transcription factor that plays essential roles in development through its interaction with DNA-regulatory elements that contain a consensus WGATAR motif (28). The results of reporter gene assays and overexpression studies demonstrated that GATA-6 repressed the ability of myocardin to activate the smMLCK promoter or to induce smMLCK expression in 10T1/2 cells (Fig. 7). These effects of GATA-6 are similar to the reported effects of GATA-6 on the telokin promoter (35). The GATA-binding sites in both the smMLCK and telokin promoters are closely apposed to a critical CArG box, and GATA-6 binding to these sites is required for GATA-6 to exert its inhibitory effects. It also was shown previously that myocardin and GATA-6 compete for binding to SRF (35). Altogether, these data have led us to propose a model in which the recruitment of GATA-6 adjacent to the CArG box may be sufficient to allow GATA-6 to compete more efficiently with myocardin for binding to SRF and thereby inhibit the activity of a myocardin-dependent promoter. This would account for the ability of GATA-6 to inhibit these promoters while activating other promoters, such as the smMHC promoter, in which the GATA site is not adjacent to the CArG box. However, because myocardin activates the smMLCK promoter minimally in vitro, GATA-6 also could inhibit the smMLCK promoter via other mechanisms, such as by recruiting a corepressor or histone deacetylase. Additional studies examining the binding of myocardin and GATA-6 to the endogenous smMLCK promoter and identifying the factors that interact with these proteins on the smMLCK promoter are required to determine the mechanisms by which myocardin and GATA-6 regulate this promoter.

In summary, we have identified and characterized the smMLCK promoter within the mylk gene. Our results show that SRF, myocardin, and GATA-6 play critical roles in the transcriptional regulation of smMLCK. These novel findings provide important insights into the complex regulation of the mylk gene that occurs during development and differentiation.


    GRANTS
 TOP
 ABSTRACT
 EXPERIMENTAL PROCEDURES
 RESULTS
 DISCUSSION
 GRANTS
 REFERENCES
 
This work was supported by National Institutes of Health Grants HL-58571, DK-61130, and DK-65644 (to B. P. Herring). J. Zhou is supported by an American Heart Association postdoctoral fellowship.


    ACKNOWLEDGMENTS
 
We thank Drs. Ron Prywes, Eric N. Olson, and Jeffery D. Molkentin for providing reagents. We are grateful to all members of the Herring laboratory for helpful discussions.


    FOOTNOTES
 

Address for reprint requests and other correspondence: B. P. Herring, Dept. of Cellular and Integrative Physiology, Indiana Univ. School of Medicine, 635 Barnhill Dr., 350E, Indianapolis, IN 46202-5120 (e-mail: pherring{at}iupui.edu)

The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.


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