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PROTEIN AND VESICLE TRAFFICKING, CYTOSKELETON
1Division of Cell and Molecular Pathology, Department of Pathology, University of Zurich; and 2Division of Metabolism and Molecular Paediatrics, University Children's Hospital, Zurich, Switzerland
Submitted 23 August 2005 ; accepted in final form 23 November 2005
| ABSTRACT |
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-galactosidase A (
-Gal A) resulting in lysosomal accumulation of glycosphingolipid globotriosylceramide Gb3. Misfolded
-Gal A variants can have residual enzyme activity but are unstable. Their lysosomal trafficking is impaired because they are retained in the endoplasmic reticulum (ER) by quality control. Subinhibitory doses of the competitive inhibitor of
-Gal A, 1-deoxygalactonojirimycin (DGJ), stabilize mutant
-Gal A in vitro and correct the trafficking defect. We showed by immunolabeling that the chaperone-like action of DGJ significantly reduces the lysosomal Gb3 storage in human Fabry fibroblasts harboring the novel mutations T194I and V390fsX8. The specificity of the DGJ effect was proven by RNA interference. Electron microscopic morphometry demonstrated a reduction of large-size, disease-associated lysosomes and loss of characteristic multilamellar lysosomal inclusions on DGJ treatment. In addition, the pre-Golgi intermediates were decreased. However, the rough ER was not different between DGJ-treated and untreated cells. Pulse-chase experiments revealed that DGJ treatment resulted in maturation and stabilization of mutant
-Gal A. Genes involved in cell stress signaling, heat shock response, unfolded protein response, and ER-associated degradation show no apparent difference in expression between untreated and DGJ-treated fibroblasts. The DGJ treatment has no apparent cytotoxic effects. Thus our data show the usefulness of a pharmacological chaperone for correction of the lysosomal storage in Fabry fibroblasts harboring different mutations with residual enzyme activity. Pharmacological chaperones acting on misfolded, unstable mutant proteins that exhibit residual biological activity offer a convenient and cost-efficient therapeutic strategy. protein trafficking; Gb3 storage; lysosomes
-galactosidase A (
-Gal A) and that results in lysosomal accumulation of glycosphingolipid globotriosylceramide Gb3 (7). Depending on the level of residual enzyme activity, early-onset systemic disease and late-onset variants can be distinguished. Although a variety of mutations of the
-Gal A gene have been identified to cause Fabry disease (see Human Gene Mutation Database, http://archive.uwcm.ac.ul/uwcm/mg/hgmd0.html), the pathogenetic mechanism leading to Fabry disease remains enigmatic.
In transgenic mouse fibroblasts overexpressing human R301Q
-Gal A, which is a disease-causing mutation in humans, we observed (36) that the mutant enzyme was retained in the ER. Apparently, the mutant
-Gal A was not correctly folded, because it formed complexes with BiP. From this we concluded that recognition and ER retention of the mutant
-Gal A by the protein quality control machinery (1, 2, 10, 27) constituted the mechanism leading to lysosomal deficiency in
-Gal A. Interestingly, the R301Q
-Gal A has been shown in vitro to degrade its substrate Gb3 similar to wild-type (WT) enzyme, and the activity of the mutant enzyme could be stabilized with its competitive inhibitor, 1-deoxygalactonorijimycin (DGJ) (11). Furthermore, the total cellular enzyme activity in cultured lymphoblasts from Fabry patients and in tissues of transgenic R301Q
-Gal A mice could be enhanced by DGJ application (11). Subsequently, we directly demonstrated that DGJ corrected the trafficking defect of ER-retained
-Gal A to lysosomes in the transgenic mouse fibroblasts overexpressing the R301Q mutant form. Under such conditions the complex formation between R301Q
-Gal A and BiP was significantly reduced, indicating that DGJ exerted a chaperone-like effect on the conformation of the enzyme. In human Fabry R301Q and Q357X fibroblasts, DGJ treatment resulted in clearance of lysosomal Gb3 storage, which was accompanied by the disappearance of multilamellar lysosomal inclusions (36). Thus our studies proved that DGJ can be used as a pharmacological chaperone to overcome the impaired trafficking of mutant misfolded enzyme and to convert the lysosomal storage phenotype in cultured Fabry fibroblasts to normal. The use of pharmacological chaperones for stabilization of mutant, but catalytically active, lysosomal enzymes (11, 19, 28, 36) provides a potential powerful alternative to substrate reduction (5, 6, 23), somatic gene therapy (18, 21, 24, 37), and enzyme replacement (4, 8).
The chaperone-like effect of DGJ on mutant
-Gal A resulting in clearance of lysosomal Gb3 storage in Fabry cells has been only shown for two mutations. In the present study, this could be extended to two more mutations causing the classic Fabry phenotype. Our analysis by electron microscopic morphometry of organelle changes showed that this was paralleled by a decrease in average size of lysosomes and numerical reduction of large-size lysosomes. Furthermore, using the small interfering RNA (siRNA) approach, we demonstrated that the DGJ action was specifically directed toward
-Gal A. It was also found in pulse-chase experiments that DGJ treatment improved the stability and resulted in the maturation of mutant
-Gal A. In addition, gene expression of various pathways of interest such as ER stress response, ER-associated degradation, as well as genes of the Gb3 biosynthetic pathway was investigated. Together, these results prove the therapeutic potential of a pharmacological chaperone for the correction of the trafficking defect in a protein misfolding disease.
| MATERIALS AND METHODS |
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Mutational analysis.
Genomic DNA from fibroblasts was obtained with a DNeasy Tissue kit (Qiagen, Hilden, Germany). The complete coding region of
-Gal A including intron-exon boundaries was PCR amplified (primer sequences and locations of amplicons are listed in supplemental Table 1; supplemental data for this article may be found at http://ajpcell.physiology.org/cgi/content/full/00426.2005/DC1). Products were purified with a Qiaquick PCR purification kit (Qiagen) and sequenced on an ABI 377 Sequencer with a Big Dye terminator kit (Applied Biosystems, Rotkreuz, Switzerland).
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Lysosomal Gb3 storage in fibroblasts. Fibroblasts grown on glass coverslips were fixed with 2% freshly prepared formaldehyde (Fluka, Buchs, Switzerland) in Hanks' balanced salt solution and saponin permeabilized (38). Gb3 immunoreactivity was detected with a mouse monoclonal anti-Gb3 antibody (0.6 µg/ml; Seikagaku, Tokyo, Japan) followed by an Alexa Fluor 488-conjugated goat anti-mouse IgG secondary antibody (Molecular Probes, Eugene, OR). After rinses and blocking of free goat IgG, lysosomes were marked with a mouse monoclonal antibody against human lysosomal membrane protein 1 (LAMP1; 0.5 µg/ml; Research Diagnostic, Flanders, NJ) followed by Red X-conjugated goat anti-mouse IgG Fab fragment (Jackson Immunoresearch Labs, West Grove, PA). After nuclear staining with 4',6-diamidino-2-phenylindole dihydrochloride (DAPI), samples were examined with a CLSM SP2 confocal laser scanning microscope (Leica, Wetzlar, Germany).
The Gb3 staining was evaluated by analyzing a minimum of 200 cells for each time point of DGJ treatment (0, 6, 30, 60, and 100 days). Lysosomal Gb3 labeling was graded in each cell from 0 to 3+, denoting increasing intensity with 0 = no detectable Gb3, 1+ = less than 10% of lysosomes containing Gb3, 2+ = 1050% of lysosomes containing Gb3, and 3+ = more than 50% of lysosomes containing Gb3.
Electron microscopy. For immunogold electron microscopy, fibroblasts were fixed in situ with 2% formaldehyde-0.05% glutaraldehyde (EM Science, Gibbstown, NJ) in PBS (0.1 M phosphate buffer, pH 7.4, 0.15 M NaCl), embedded in 2% low-melting agarose (Cambrex, East Rutherford, NJ), and infiltrated with a 2 M sucrose-15% polyvinylpyrrolidone mixture. Ultrathin cryosections were prepared according to a standard protocol (31, 32), conditioned with 1% BSA in PBS, incubated with monoclonal anti-Gb3 antibody (1.2 µg/ml) and anti-LAMP1 antibody (5 µg/ml) followed by appropriate 6- and 12-nm gold-labeled secondary reagents (26), and examined with an EM912 AB transmission electron microscope (Zeiss, Oberkochen, Germany).
For conventional transmission electron microscopy, fibroblasts were fixed in situ with 3% glutaraldehyde in PBS followed by 1% aqueous solution of osmium tetroxide and embedded in Epon 812 (Fluka Chemie, Buchs, Switzerland). Ultrathin sections were counterstained with 3% aqueous uranyl acetate and 1% lead citrate and examined with an EM912 AB electron microscope.
Electron microscopic morphometry. The value for the numerical density of cellular organelles was based on the evaluation of ultrathin Epon sections of entire cross sections of 20 cells of each Fabry fibroblast line with and without DGJ treatment. The images were taken at a primary magnification of x20,000. Negatives were scanned and analyzed with Adobe Photoshop software (version 6.0). Images were overlaid with a grid with line spacing corresponding to 0.2 µm on the micrograph. Measurement of organelle numerical density on area (which is the number of profiles per unit area of reference structure) was carried out with the point counting method (35). In brief, points over the organelle of interest were quantified and divided by points in the cytoplasm without the respective organelle. The data were analyzed by Mann-Whitney U-test for the determination of statistical significance.
RNA interference.
Oligonucleotides designed to produce siRNA targeting
-Gal A mRNA were 5'-AATTTGGCAGATGGTTATAAGCCTGTCTC-3' (antisense, nucleotides in bold are those targeting
-Gal A in the region of nt 535555; GenBank accession no. X05790) and 5'-AACTTATAACCATCTGCCAAACCTGTCTC-3' (sense). siRNA was synthesized by Silencer siRNA Construction kit (Ambion, Huntingdon, UK) and transfected to human Fabry fibroblasts by Oligofectamine (Invitrogen) at a concentration of 0.5 nM. GAPDH siRNA (Ambion) was used in parallel to verify specific suppression. The cells were cultured in the presence of siRNA with and without 20 µM DGJ for 6 days and stained by double immunofluorescence with anti-Gb3 and anti-LAMP1 antibodies. Semiquantitative scoring of various treated cells with different lysosomal Gb3 intensity was performed.
Metabolic labeling, immunoprecipitation, and SDS-polyacrylamide gel electrophoresis.
To examine the effect of DGJ on the stability and maturation of
-Gal A, transgenic TgN and TgM mouse fibroblasts overexpressing human WT and R301Q mutant
-Gal A, respectively (11), were grown in culture dishes (60 mm in diameter) to
70% confluence. The cells were incubated in cysteine- and methionine-free Dulbecco's modified Eagle's medium (Sigma) containing dialyzed fetal bovine serum for 30 min at 37°C. For pulse labeling, the cells were incubated in fresh medium containing 100 µCi/ml of 35S-cysteine and 35S-methionine for 10 min at 37°C. For the chase, the radioactive medium was removed and cells were washed twice with Hanks' balanced salt solution (Sigma) and incubated in McCoy's 5A medium (Sigma) containing fetal bovine serum and 1 mM cysteine and methionine for up to 4 h. At the end of the chase period, cells were washed twice with ice-cold PBS, mechanically removed by cell scraper, and lysed in 300 µl of RIPA buffer (50 mM Tris, pH 7.5, 150 mM NaCl, 1% NP-40, 15 mM sodium deoxycholate, 0.1% SDS, 2 mM EDTA, and protease inhibitors) for 60 min at 4°C. After centrifugation, the supernatant was diluted once with PBS, added to Dynabead protein A (DYNAL, Oslo, Norway) conjugated with anti-human
-Gal A antibody (provided by J. Q. Fan, Mt. Sinai School of Medicine, New York, NY), and incubated overnight at 4°C. Beads were collected with a magnetic stand and washed four times with PBS containing 0.05% BSA and once with PBS. Immunoprecipitated proteins were released by boiling for 10 min in Laemmli buffer containing 10%
-mercaptoethanol and resolved in 10% SDS-polyacrylamide gel. The gel was treated with EN3hance (PerkinElmer, Boston, MA) and dried, and the bands were visualized by a phosphoimager (Fuji Film, Minami-Ashigara, Japan).
RIPA-soluble fractions were collected, and proteins were precipitated with a fourfold volume of ice-cold acetone overnight at 20°C. Proteins were sedimented, resuspended in SDS sample buffer, immunoblotted with anti-mouse GAPDH antibody (Ambion), and detected by enhanced chemiluminescence (Amersham Biosciences, Chalfont St. Giles, UK).
Gene expression studies. To determine whether DGJ treatment has any effect on cell metabolism, expression of genes involved in various signaling pathways was examined. Fibroblasts treated with 20 µM DGJ were collected at 10-min intervals over a period of 3 h. In addition, fibroblasts treated with DGJ for 75 days were analyzed. Total RNA was extracted and reverse transcribed with random primers and avian myeloblastosis virus reverse transcriptase (Promega, Madison, WI). cDNA was amplified with specific primers for calnexin and calreticulin as well as genes associated with the Gb3 biosynthetic pathway, cell stress signaling, heat shock response, unfolded protein response, and ER-associated degradation (supplemental Table 2). PCR products were resolved by agarose gel electrophoresis, and band intensities were analyzed by Quantity One image analysis software (Bio-Rad). The number of cycles in each gene amplification was optimized in the linear increasing range of product intensity.
| RESULTS |
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-Gal A exons and adjacent introns revealed two novel sequence modifications (with reference to GenBank accession no. X14448) in the studied Fabry fibroblasts. For patient 1 (see supplemental data), we detected a single C to T transition at nt 581 in exon 4, which caused a missense substitution of threonine to isoleucine at position 194 (T194I) (see supplemental Fig. 1A). Patients 2 and 3 (see supplemental data), belonging to the same pedigree, had a single thymidine insertion at nt 1168 of exon 7, leading to a frameshift of valine at position 390 that resulted in a premature stop codon at amino acid position 398 (see supplemental Fig. 1B). A total of 8 amino acids were changed, and 31 amino acids were deleted. This novel change was characterized as V390fsX8. All patients exhibited residual enzyme activity in serum and fibroblasts (data not shown), indicating that the mutations did not interfere with the catalytic site of the enzyme but affected proper targeting to lysosomes. This indicates that these mutant
-Gal A might be a target for pharmacological chaperone treatment.
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200 cells at different time points of 20 µM DGJ treatment is shown in Fig. 1F. A significant number of cells had undetectable lysosomal Gb3 staining. Specifically, one-third of T194I fibroblasts and one-quarter of V390fsX8 fibroblasts became nonreactive for Gb3. In the remaining cells, the intensity of Gb3 staining in lysosomes was greatly reduced. Accordingly, the percentage of V390fsX8 fibroblasts with intense lysosomal Gb3 staining was reduced from 38% to 4%, and the remaining positive cells exhibited only faint Gb3 staining. The DGJ effect on Gb3 storage was consistently observed in the studied T194I and V390fsX8 fibroblasts. This confirms and extends our previous observations on R301Q and Q357X fibroblasts (36). The immunofluorescence results were confirmed by electron microscopic double immunogold labeling. In untreated cells, intense labeling for Gb3 (small gold particles) in lysosomes (LAMP1 staining by large gold particles) was observed (Fig. 2A), which became greatly reduced in DGJ-treated cells (Fig. 2B). This was paralleled by the disappearance of the typical multilamellar lysosomal inclusions (compare Fig. 2C with Fig. 2D).
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900) revealed a significant loss of large-sized lysosomes (cross-sectional area > 16 points; P = 0.0007, Mann-Whitney U-test) in DGJ-treated V390fsX8 cells (Fig. 3). A similar trend was observed for the Q357X fibroblasts (see supplemental Fig. 2A). No obvious effect on the numerical density of lysosomes was observed for the T194I fibroblasts (Table 1), although a decrease in the number of large-sized lysosomes was noted (see supplemental Fig. 2B). The numerical density of the rough ER was not different between DGJ-treated and untreated cells, whereas that of the pre-Golgi intermediates of T194I and V390fsX8 cells was decreased after DGJ treatment (Table 1).
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-Gal A is the specific target of DGJ. siRNA was designed to the midregion of
-Gal A mRNA and transiently transfected to various human Fabry fibroblasts. It almost completely suppressed
-Gal A mRNA expression (Fig. 4A) and resulted in abolition of the effect of DGJ treatment on lysosomal Gb3 storage (Fig. 4B). No effects were observed on the mRNA expression levels of other genes involved in the Gb3 biosynthetic pathway (Supplemental Fig. 3). In parallel assays, scrambled
-Gal A sequences and GAPDH siRNA were used to demonstrate the specificity of the
-Gal A knockdown (Fig. 4).
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-Gal A, a pulse-chase experiment was performed on transgenic TgN and TgM mouse fibroblasts overexpressing human WT and R301Q
-Gal A, respectively. After the pulse, WT
-Gal A existed in two bands, representing the immature ER form (51 kDa) and the mature form (46 kDa) (Fig. 5). After 1 and 4 h of chase, only the mature form was observed (Fig. 5). In contrast, the R301Q mutant
-Gal A existed only as the immature ER form after the pulse and the chase for up to 4 h (Fig. 5). This is in accordance with the reported retention of the aggregated R301Q
-Gal A in the ER (13). However, after treatment with 20 µM DGJ during the chase, the enzyme existed predominantly in the mature post-ER form (Fig. 5). The higher intensity of the band after a 4-h chase, compared with the 1-h chase, indicates stabilization of the mutant
-Gal A, extending our previous findings (36) on the presence of mutant enzyme in lysosome-enriched fractions after DGJ treatment.
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-Gal A, Gb3 synthase, lactosylceramide synthase, and ceramide glucosyltransferase of the Gb3 biosynthetic pathway of short (0180 min)- and long (up to 75 days)-term DGJ-treated cells revealed no transcriptional changes in the steady-state RNA levels (see supplemental Fig. 4A). One example of these gene expressions at 60-min intervals is shown in Fig. 6. Genes involved in cell stress signaling, heat shock response, unfolded protein response, and ER-associated degradation showed no apparent difference in expression between untreated and DGJ-treated fibroblasts (Fig. 7 and supplemental Fig. 4B).
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| DISCUSSION |
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-Gal A variants were directed to lysosomes, and this resulted in the clearance of lysosomal Gb3 storage in Fabry fibroblasts. This was paralleled with the disappearance of multilamellar lysosomal inclusions and large-sized, disease-associated lysosomes. With this reproducible and robust effect on Gb3 storage in different
-Gal A variants (e.g., single-base mutations, frameshifting leading to early truncation), we show the generality of DGJ action on this misfolded but catalytically competent enzyme. The specificity of DGJ on the functional enhancement of
-Gal A was proven by RNA interference knockdown. Our pulse-chase experiments showed that DGJ had a stabilizing effect on the R301Q mutant protein, leading to its maturation and trafficking into lysosomes as previously shown (36). Apparently, the drug had no cytotoxic effects. Hence, our data validate the chaperone-like action of DGJ on various mutant
-Gal A and show the applicability of this compound for enzyme stabilization that results in clearance of the lysosomal Gb3 storage.
Similar to other inherited metabolic disorders (1, 2, 10, 27) defective trafficking of mutant
-Gal A was a major component in the pathogenesis of Fabry disease. Because of the defective folding, mutant
-Gal A variants were retained in the ER and could not reach the lysosomes (36). In transgenic mouse fibroblasts overexpressing human R301Q mutant
-Gal A, a reticular staining pattern of the enzyme, indicative of its ER distribution, rather than a punctate lysosomal staining was observed. This phenomenon of ER retention was further proven by the preferential binding of R301Q mutant
-Gal A to BiP, an ER-chaperone recognizing and binding to misfolded proteins. Accordingly, directing the ER-trapped mutant
-Gal A to lysosomes with the use of a pharmacological chaperone represents a major step forward in the development of a rational therapy for Fabry disease, and the principle should be applicable to other protein trafficking disorders (15, 25, 30, 34).
As shown from our previous work, misfolded
-Gal A variants (e.g., R301Q) are expected to stay in the ER in a sustained fashion, leading to possible degradation or aggregate formation (13), regardless of their catalytic competence (36). Binding of the active site-directed DGJ apparently chaperones unstable enzyme variants at the neutral pH in the ER (3, 11). This interaction increases the thermodynamic stability of mutant molecules and salvages them from denaturation (9). This allows mutant proteins such as
-Gal A to pass through the ER quality control and to become sorted into lysosomes (36). This is accompanied by the maturation of the 51-kDa form of the mutant
-Gal A to the 46-kDa post-ER form as demonstrated in the present work. Once in the lysosome, catalytically active mutant
-Gal A stays stable in this low-pH environment that favors its folding. Moreover, DGJ dissociates from the
-Gal A because of both the high substrate concentration and the low-pH milieu. Collectively, these events result in clearance of lysosomal Gb3 storage.
With regard to lysosomal enzymes, it is known that normal substrate turnover can occur at around a threshold level of 1015% of normal enzyme activity (17). Glucocerebrosidase activity can be as low as 1115% of normal levels before substrate storage commences in a cell culture model of Gaucher disease (29). In patients receiving enzyme replacement therapy, only a very small quantity of recombinant enzyme remains in tissues hours after infusion, yet the extent of enzyme activity increase is sufficient to reduce the lysosomal storage. Thus a slight increase of the activity of a mutant enzyme in lysosomes appears to be clinically useful. In our work, we observed clearance of lysosomal Gb3 storage under DGJ treatment that was paralleled by the disappearance of Gb3 and typical multilamellar lysosomal inclusions. This proves that the lysosomal
-Gal A activity was above the critical threshold for successful substrate turnover. In line with this, we measured a significant increase of total cellular
-Gal A activity in cultured T194I fibroblasts after DGJ treatment (data not shown; see also Ref. 36). However, not every mutant showed a measurable effect of DGJ on residual
-Gal A activity. This was the situation for V390fsX8 fibroblasts with truncated
-Gal A, despite the clearance of lysosomal Gb3 storage.
Our experiments on human Fabry fibroblasts demonstrate the usefulness of the small-molecule competitive inhibitor DGJ to enhance
-Gal A activity to a level that results in lysosomal Gb3 clearance. As we have demonstrated in the present study, this is not due to upregulation of
-Gal A gene expression but to the chaperone-like effect of DGJ on the enzyme. DGJ has been shown to have no effect on enzymes of the glycolipid biosynthetic pathway other than
-Gal A (22). Our
-Gal A knockdown experiments and expression studies of genes involved in the cellular stress response add further evidence for the specificity of DGJ toward
-Gal A.
Currently, DGJ has been successfully applied to six distinct naturally occurring disease-causing mutants of
-Gal A. For variants S65T, T194I, Q279E, and R301Q enhancement of enzyme activity was reported (11, 14) and for variants T194I, R301Q, Q357X, and V390fsX8 effective clearance of the lysosomal Gb3 storage (Ref. 36 and present study). The latter DGJ effect was maintained over periods of treatment as long as 100 days without apparent adverse effects or any changes in the rate of apoptotic cell death (not shown). In line with this, overdosing
-Gal A transgenic mice with DGJ resulted in no general signs of toxicity (11).
In conclusion, our study demonstrates the feasibility of the use of the small molecule DGJ as a pharmacological chaperone for enzyme stabilization in fibroblasts from Fabry patients with classic clinical symptoms. However, we are fully aware of the limitations of the cell culture model that are related to possible enzyme activity variations between different cell types and tissues and additional modulatory genetic and epigenetic factors occurring in whole organisms. Thus experiments involving transgenic animals are needed to refine and extend our observations. This will require transgenic animals other than those currently available, which overexpress
-Gal A to such an extent that no disease phenotype can be detected. Unlike recombinant enzymes, the small-mass pharmacological chaperones can diffuse freely in tissues (11) and cross the blood-brain barrier, which will be of critical importance when the central nervous system is involved (19). Therefore, small molecules acting as pharmacological chaperones on misfolded but catalytically active mutant proteins offer a convenient and cost-efficient therapeutic strategy for protein folding diseases.
| GRANTS |
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| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
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