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1 Department of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, Connecticut 06520; and 2 University Laboratory of Physiology, University of Oxford, Oxford OX1 3PT, United Kingdom
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ABSTRACT |
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We have
functionally characterized Na+-driven bicarbonate
transporter (NBC)4, originally cloned from human heart by Pushkin et
al. (Pushkin A, Abuladze N, Newman D, Lee I, Xu G, and Kurtz I. Biochem Biophys Acta 1493: 215-218, 2000). Of the four
NBC4 variants currently present in GenBank, our own cloning efforts yielded only variant c. We expressed NBC4c (GenBank accession no.
AF293337) in Xenopus laevis oocytes and assayed membrane potential (Vm) and pH regulatory function with
microelectrodes. Exposing an NBC4c-expressing oocyte to a solution
containing 5% CO2 and 33 mM HCO


intracellular pH; 4,4'-diisothiocyanostilbene-2,2'-disulfonic acid; microelectrodes; stoichiometry; Xenopus laevis oocytes
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INTRODUCTION |
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THE EXPRESSION
CLONING of the first Na+-driven bicarbonate
transporter (NBC) by Romero et al. (36) led to the cloning
of many other electrogenic and electroneutral Na+-driven
HCO
The electroneutral Na+-driven HCO
-independent
Na+-HCO
The second group of electroneutral Na+-driven
HCO
-dependent transport of Na+ and
HCO
/HCO
NBC4, originally cloned by Pushkin et al. (32), is a new
member of the HCO

We mapped the NBC4 sequence onto a recent topology model developed for
the anion exchanger AE1 (Fig.
1A), which is in the same
superfamily as the Na+-coupled HCO

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We have undertaken the present study to investigate the functional
properties of NBC4. Using PCR, we obtained nine clones corresponding to
the NBC4c coding region but none corresponding to the other NBC4
variants. We have expressed NBC4c in Xenopus laevis oocytes
and assayed for pH regulatory function as well as membrane potential
and ionic currents. The results show that NBC4c is an electrogenic
Na+-HCO

Portions of this work have been published in abstract form (44).
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METHODS |
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cDNA Cloning
On the basis of the published cDNA sequence for NBC4a (GenBank accession no. AF243499; Ref. 33), we designed oligonucleotide primers corresponding to the 5' and 3' regions of the open reading frame to this clone. We performed PCR with sense primer 5'-CCTCGAGTCATGAAGGTGAAGGAGGAGAAGC-3' and antisense primer 5'-CCCGGGAAGAATCAGAGTGAGTAACTCCAACTGG-3' using, as a template, a mixture of human cDNAs from 37 different normal tissues, including brain, heart, kidney, liver, lung, and testes (Human Universal QUICK-Clone cDNA; Clontech Laboratories, Palo Alto, CA). The underlined portions of the primer sequences correspond to the engineered restriction enzyme sites for XhoI and XmaI, respectively. We subcloned the PCR products into a TA cloning vector (pCR II TOPO; Invitrogen, Carlsbad, CA). Individual clones were sequenced by GeneWiz (New York, NY) or the Keck Biotechnology Resource Laboratory, Boyer Center for Molecular Medicine, Yale University. The consensus cDNA sequence contained a 3,366-bp open reading frame that encodes 1,121 amino acids, which is identical to the c variant of human NBC4 (GenBank accession no. AF293337).Expression in Oocytes
We subcloned the cDNA fragment into the KSM Xenopus oocyte expression vector by excising the insert from pCR II TOPO with XhoI and XmaI. The KSM expression vector is a derivative of pBluescript, in which the entire polylinker was replaced by a PCR product encoding (from 5' to 3') the 5' untranslated region (UTR) of the Xenopus
-globin gene, a series of
restriction sites for subcloning, the 3' UTR of the Xenopus
-globin gene, a poly-A tail, and several additional restriction
sites for 3' linearization of cDNA before in vitro transcription. The
vector was a kind gift from Dr. William Joiner (Yale University).
Capped mRNA was synthesized in vitro with the T3 Message Machine kit
(Ambion, Austin, TX).
Stage V-VI oocytes from Xenopus laevis were isolated as described previously (35). One day after isolation, the oocytes were injected with 50 nl of a solution containing 0.5 ng/nl of mRNA encoding NBC4c. Control oocytes were injected with 50 nl of sterile water. The oocytes were used in experiments 2-5 days after injection. All experiments were performed at room temperature (~22°C).
Solutions
Nominally HCO


-free solutions were prepared by
substituting gluconate for Cl
. Osmolality of all
solutions was ~200 mosmol/kgH2O. For
butyrate-containing solutions, 30 mM Na-butyrate replaced 30 mM NaCl in
ND96. Assuming that butyrate has a pKa of 4.8 and that the buffering power of an oocyte is 13.5 mM/pH,1 we calculated that 30 mM extracellular butyrate would give approximately the same degree of
intracellular acidification as 5% CO2.
Electrophysiological Measurements
An oocyte was placed in a perfusion chamber and constantly superfused at a solution flow of 4 ml/min. Bath solutions were delivered with syringe pumps (Harvard Apparatus, South Natick, MA), and solutions were switched with pneumatically operated valves (Clippard Instrument Laboratory, Cincinnati, OH). In all experiments, the oocyte was initially superfused with the ND96 solution, which is nominally CO2/HCO
Measurement of intracellular pH. We assayed pH regulatory function of oocytes expressing NBC4c by measuring intracellular pH (pHi) with pH-sensitive microelectrodes. The electrodes were fabricated and used as described previously (36, 40). Briefly, the oocyte was impaled with two microelectrodes, one for measuring the membrane potential (Vm) and the other for measuring pHi. The tip of the pH electrode contained a liquid membrane across which a pH-dependent voltage was generated. pHi was obtained by subtracting the signal of the Vm electrode from that of the pH electrode. A calomel electrode was used as the reference in the bath. Voltages were measured with an FD 223 electrometer (World Precision Instruments, Sarasota, FL), and data were acquired with software written in-house. The system was calibrated with buffered pH standards at pH 6.0 and 8.0. An additional single-point calibration was performed with the standard ND96 solution of pH 7.50 in the bath before the oocyte was impaled.
Two-electrode voltage clamp.
We used two-electrode voltage clamp to measure whole cell ionic
currents in oocytes expressing NBC4c or injected with water (control).
Oocyte currents and voltages were recorded with a model OC-725C oocyte
clamp (Warner Instruments, Hamden, CT) controlled by the Clampex module
of pCLAMP software (Version 8; Axon Instruments, Foster City, CA).
Electrodes were pulled from thin-walled borosilicate glass and had
resistances of 0.4-1.0 M
when filled with 3 M KCl. Oocytes were
held at a potential close to the spontaneous Vm
until the initiation of the voltage-clamp protocol. Current-voltage (I-V) relationships were generated by stepping the holding
potential from
140 mV to +40 mV in 20-mV increments, each of which
lasted 200 ms. Data were analyzed with the Clampfit module of pCLAMP.
Stoichiometry
To probe the HCO



The reason for returning to Na+-free solutions for 2-3
min between I-V curves was to minimize changes in
intracellular Na+ concentration
([Na+]i) and
[HCO





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RESULTS |
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Nine Consecutive PCR Products Represented NBC4c
Our cloning strategy was designed to pick up any of the four NBC4 variants currently in GenBank. After performing end-to-end PCR and subcloning the PCR product into a cloning vector, we sequenced nine independent clones. All of these clones corresponded to the c variant of NBC4.NBC4 is Electrogenic, Na+
Dependent, and Cl
Independent
pHi data.
Figure 2A shows a recording of
pHi and Vm for an oocyte injected
with cRNA encoding NBC4c, and Fig. 2B shows a similar
recording for a water-injected (control) oocyte. The initial
pHi of the NBC4c-expressing oocytes was slightly higher
(7.34 ± 0.01; n = 18) than in the controls
(7.22 ± 0.03; n = 9), suggesting that the ambient
HCO









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Voltage-clamp data.
Using a two-electrode voltage clamp, we further explored the
electrogenic nature of NBC4c. Figure
3A shows representative current records obtained in an NBC4c-expressing oocyte under three conditions: the nominal absence of
CO2/HCO



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with the impermeant gluconate does not change
Erev and has little effect on either the inward
or outward currents, indicating that NBC4c does not require external
Cl
to operate in either direction. In contrast, replacing
extracellular Na+ with NMDG+ shifts
Erev to more positive values and virtually
abolishes outward current (i.e., inward movement of the negative net
charge carried by 1 Na+ and 2 or more
HCO







slightly
reduced the outward current (i.e., inward movement of Cl
)
but did not bring the residual outward currents to the same levels as
in control oocytes. The increased "background" conductance seen in
the present study is not unique to NBC4c. Compared with control
oocytes, those expressing either rat kidney NBCe1-A (39) or rat NBCn1 (11) exhibit increased background conductances.
Electrical Gradient Can Drive Substantial Acid-Base Transport Through NBC4c
In the experiment shown in Fig. 2A, the pHi recoveries in the presence of Na+ and CO2/HCO

120 mV. This voltage is nearly
the same as Erev for the I-V curve in
Fig. 3B, which was obtained under similar conditions.
To test this hypothesis, we performed an experiment similar to that
shown in Fig. 2A except that, at times, we not only
monitored pHi but voltage clamped as well. The oocyte had a
spontaneous Vm of about
50 mV when impaled
only with the voltage electrode. Vm shifted to
about
45 mV when we introduced the current electrode and initially
fell to about
25 when we introduced the pH electrode. By the
beginning of the record in Fig. 4,
Vm had recovered somewhat, but this oocyte was
still rather "leaky." Introducing
CO2/HCO
100 mV (compared with about
155 mV for the tighter
oocyte in Fig. 2A). At the times indicated in Fig. 4, we
acquired I-V curves by using the same voltage protocol as in
Fig. 3. We calculated Erev for the
NBC4c-dependent currents by subtracting the I-V curve
acquired in ND96 from the I-V curves acquired in the
CO2/HCO
110 mV,
compared with a spontaneous Vm of about
95 mV.
This ~15-mV difference between Erev and
Vm would explain why the spontaneous
pHi recovery is faster in Fig. 4 than in Fig. 2. When we
then voltage-clamped the oocyte in Fig. 4 to
30 mV, pHi
increased approximately six times more rapidly than when
Vm was free-floating at about
95 mV. This
large increase in the pHi recovery rate is consistent with
the large increase in the difference between
Erev (
90 mV) and the clamped
Vm of
30 mV. When we reversed the transporter
by removing extracellular Na+ in Fig. 4
(Vm =
30 mV), pHi initially
decreased more rapidly than in Fig. 2 (Vm = +2 mV). Thus a large electrical gradient can substantially increase
acid-base transport through NBC4c. The rates of pHi change
in oocytes clamped to
30 mV are compared with those of unclamped
oocytes in Table 1.
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While continuing to voltage clamp the oocyte in Fig. 4 at
30 mV, we
removed extracellular Cl
in the absence of
Na+ to revisit the question of whether acid-base transport
by NBC4c requires extracellular Cl
. If NBC4c were
a Na+-driven Cl
-HCO
when
running in reverse. However, even at a relatively high rate of
pHi decrease in Fig. 4, Cl
removal had no
effect on the pHi trajectory. Thus NBC4c does not mediate
Na+-driven Cl-HCO
NBC4c is HCO







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NBC4c Is Blocked by DIDS
pHi data.
To determine whether NBC4c is sensitive to
4,4'-diisothiocyanostilbene-2,2'-disulfonic acid (DIDS), we
exposed NBC4c-expressing oocytes and control oocytes to 200 µM DIDS
during the plateau phase of a CO2/HCO
5 pH units/s
(n = 5), an inhibition of ~80%. Thus DIDS strongly inhibits the transport function of
NBC4c.2 Although the
inhibition of some HCO
5 pH units/s before application of DIDS and
1.7 ± 0.9 × 10
5 pH units/s after application of DIDS
(n = 3).
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Voltage-clamp data. Using two-electrode voltage clamp, we investigated the effect of 200 µM DIDS on the current carried by NBC4c. Because work by Diakov et al. (14) has shown that DIDS (at a concentration of 250 µM) can activate endogenous ion channels in the oocyte over a period of 15-60 s, we exposed the oocytes to DIDS for no more than ~20 s, which we found to be sufficient for maximal inhibition.
Figure 7A summarizes data from a representative experiment in which we obtained sequential I-V curves at four times, with the oocyte exposed to 1) ND96, 2) CO2/HCO


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Apparent
HCO
Slope of Erev vs. log of extracellular
Na+ concentration.
To determine the HCO


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(1) |



ln(10) × RT/[F(q
1)]. Thus the higher
the HCO

58.5 mV/log
[Na+]o, whereas for a stoichiometry of 3:1,
the slope would be only half as steep,
29.3 mV/log
[Na+]o. The results of five experiments (each
including all 4 [Na+]o values) are summarized
in Fig. 8, which is a plot of
Erev against [Na+]o.
Our experimental data are fitted well by a straight line with a slope
of
54.8 mV/log [Na+]o, consistent with the
hypothesis that NBC4c operates with a 2:1 stoichiometry.
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Erev, the transporter has a low activity, and
one would expect [Na+] and [HCO
measured with an intracellular
microelectrode
to fall from ~9 mM to only ~8 mM over ~2 min.
Moreover, if [Na+] near the two unstirred layers in our
experiments had changed appreciably, we would not have obtained the
linear relationship shown in Fig. 8.
Absolute value of Erev.
Another approach for estimating stoichiometry is to compute
q directly from each Erev value.
Solving Eq. 1 for q yields
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(2) |




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DISCUSSION |
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The aim of this study was to determine the functional properties
of NBC4, originally cloned from human heart by Pushkin et al.
(32) but uncharacterized physiologically. Currently
GenBank contains the sequences for four different NBC4 variants (NBC4a, b, c, and d). Our own cloning efforts resulted in the cloning of the
NBC4c variant, which we have expressed in Xenopus oocytes. We report here that NBC4c carries out electrogenic
Na+-HCO
, is blocked by DIDS,
and operates with an HCO
Different NBC4 Variants
Considerable progress has been made in the last few years on the topology of anion exchangers (AEs), which are ~30% identical to the NBCs on the amino acid level. The membrane domain of AE1 (i.e., the portion lacking the presumably cytoplasmic NH2 and COOH termini) is ~40% identical to that of the Na+-coupled HCO
Comparing the cDNA sequence of NBC4c with the human genome database
reveals the presence of 25 exons that span the length of the coding
region. Variants a and b share an additional exon not present in c and
d. The presence of this additional exon results in a 16-amino acid
insertion into the very short region between putative TMs 11 and 12, a
region that is highly conserved among all superfamily members. In
addition, the third-to-last exon in variant b is longer than in the
other variants because, at its 5' end, it contains 16 bp of intronic
sequence (Fig. 1B). This 16-bp insertion creates a
frameshift in the middle of the last TM, resulting in a truncated COOH
terminus (Fig. 1B) that has no homology to other members of
the BT superfamily. Variant d is lacking two additional exons between
TMs 10 and 14, resulting in a 294-bp deletion in a region that is very
highly conserved in all members of the BT superfamily. Thus variant c
is the only one of the four NBC4 variants whose deduced amino acid
sequence maps onto the superfamily consensus sequence without major
gaps or insertions. Indeed, nine consecutive cDNA clones in our
study
obtained by PCR using, as a template, a mixture of human cDNAs
from different tissues
proved to be of the c variety. If the four
original NBC4 mRNA species had been evenly distributed, and if the PCR
efficiencies for the respective cDNA species were identical, then the
odds of picking the c variant nine times in a row would be 1 in
49. It will be informative to learn whether variants a, b,
and d encode functional proteins.
DIDS
Our results show that 200 µM DIDS strongly blocks both the pHi recovery and ionic currents mediated by NBC4c. DIDS is a classic inhibitor of anion transport via AEs, various Na+-coupled HCO

In NBC4c, the sequence at the homologous TM 5 site is KMIG. Thus DIDS
blocks the function of NBC4c even though NBC4c lacks the second K of
the consensus motif. However, NBC4c is not the first DIDS-sensitive BT
family member with a disrupted consensus motif. NDAE1 from
Drosophila (37) and human NDCBE
(18) are both DIDS sensitive, even though the sequences at
their respective homologous sites are NVMV and KLIH. One explanation
for these observations is that DIDS may inhibit transport by NBC4c (and also by NDAE and NDCBE1) via an ionic interaction that does not require
the consensus DIDS reaction motif. Alternatively, DIDS may covalently
react at another site on the transporter molecule. Distinguishing among
these possibilities will require a structure-function analysis of the
three different aspects of the interaction of DIDS with the
Na+-coupled HCO
NBC4 in Liver
Probing human Northern blots with NBC4, Pushkin et al. (32) found that the strongest signal appears in the liver. So far, no other Na+-coupled HCO
/HCO








NBC4 in Kidney
The vast majority of renal HCO




The only thing that is known about the renal localization of NBC4 is
that the message is present in the kidney lane of human Northern blots.
Thus it is not clear whether NBC4 participates in
HCO





NBC4 in Heart
Na+-HCO




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ACKNOWLEDGEMENTS |
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We thank Dr. William Joiner for the gift of the Xenopus expression vector.
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FOOTNOTES |
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This work was supported by National Institute of Diabetes and Digestive and Kidney Diseases Grant DK-30344. L. V. Virkki was supported by a fellowship from the American Heart Association.
1
The buffering power
of an oocyte was
calculated from the change in [HCO

=
[HCO
pHi.
2
A question that arises is why DIDS inhibits
acid-base transport by ~80% but has only a modest effect on
Vm. Because the oocyte is very "tight"
electrically, a small NBC4c current can drive Vm
very close to Erev. Thus, whereas the NBC4c
current and the rate of pHi recovery depend linearly on the
turnover rate of NBC4c, Vm does not
because of
the tightness of the oocyte, only a relatively small turnover is
required to drive Vm very close to
Erev.
Address for reprint requests and other correspondence: L. V. Virkki, Dept. of Cellular and Molecular Physiology, Yale Univ. School of Medicine, PO Box 208026, 333 Cedar St., New Haven, CT 06520-8026 (E-mail: leila.virkki{at}yale.edu).
The costs of publication of this article were defrayed in part by the payment of page charges. The article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
First published January 16, 2002;10.1152/ajpcell.00589.2001
Received 12 December 2001; accepted in final form 9 January 2002.
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